docs: README, example config, and Phase G completion notes

Document install, config, chat/one-shot, slash commands, workspace and
safety model. Add doc/plyngent.example.toml; refresh CLAUDE and architecture.
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- utils: Common utilities for code architecture.
- components: Utilities for class composition.
- memory: Storage controlling for sessions and messages.
- router: Multi-source capability routing and interception.
- interceptors: Capability of stealing a few arguments for partial re-routing.
- ...
- config: Plyngent configuration center.
- agent: Agent capabilities and controlling.
- tools: Client code of tool calls.
- cli: CLI for chat/agent application.
- web: Web service for chat/agent application.
- router: Multi-source capability routing (Phase H; not implemented).
- config: Plyngent configuration center (TOML).
- agent: Tool loop, streaming, usage, compact.
- tools: Workspace file/process/VCS/chat tools.
- prompting: Shared ask/choose/form for CLI and tools.
- cli: Click entry, slash registry, REPL, one-shot chat.
- web: Web service (Phase H; not implemented).